Haruka OZAKI, Ph.D.
Associate Professor at Bioinformatics Laboratory, Faculty of Medicine, University of Tsukuba
Employment
2018 June - Present | Associate Professor at Bioinformatics Laboratory, Faculty of Medicine, University of Tsukuba
2016 Apr - 2018 May | Special Postdoctoral Researcher, Bioinformatics Research Unit, Advanced Center for Computing and Communication, RIKEN
2015 Apr - 2016 March | Postdoctoral Researcher, Bioinformatics Research Unit, Advanced Center for Computing and Communication, RIKEN
Education
2015 Mar | Ph.D., Department of Computational Biology, Graduate School of Frontier Sciences, the University of Tokyo
2012 Mar | Master of Science, Department of Computational Biology, Graduate School of Frontier Sciences, the University of Tokyo
2010 Mar | Bachelor of Science, Department of Biophysics and Biochemistry, School of Science, the University of Tokyo
Programming
- Perl, R, Java, Python, Julia
Bioinformatics
- Single-cell RNA-seq data anlaysis
- ChIP-Seq and RNA-Seq data analyses
- DNA-binding motif discovery
- Sequence analyses
- Variant detection
Software development
- MOCCS (Software for enumerating DNA-binding motifs from ChIP-seq data)
- ramdaq (A Nextflow-based pipeline for quality control of single-cell RNA-seq data)
- Millefy (An R package for visualizing cell-to-cell variability of read coverage in scRNA-seq datasets)
- ReadCoverage.jl (A Julia package for the fast calculation of read coverage from NGS data)
- FastqSubsample (A Julia package for subsampling reads from a FASTQ file)
- qacctTable (A Julia package for processing job scheduler reports)
Awards
- 2nd award in DDBJ Data Challenge 2016 (Collaboration with Dr. Hirotaka Matsumoto) (2016)
- Dean Prize, Graduate School of Frontier Sciences, the University of Tokyo (Doctoral Course) (2015)
- Dean Prize, Graduate School of Frontier Sciences, the University of Tokyo (Master Course) (2012)
Community
- Japanese Society for Bioinformatics
- Molecular Biology Society of Japan
- Society of Evolutionary Studies, Japan
- Society of Genome Microbiology, Japan
- NGS Field (2011-present board member)
- Young Researchers Group for Computational/Omics/Systems Biology in Japan (2014-present staff)
- Asian Young Researchers Conference on Computational and Omics Biology (AYRCOB) (2012-present committee member)
Publications
See Publications
Contacts
- Email: harukao.cb[at]gmail.com / haruka.ozaki[at]md.tsukuba.ac.jp
- Google scholar
- Impactstory
- ORCID: 0000-0002-1606-2762
- Publons
- SNS